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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26316646_26319262_F

Intron Information:

Intron Rank:
150981
Intron Class:
major
Intron Phase:
Intron Coordinates:
26316646 - 26319262
Intron Length:
2617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
ATTTCTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
80.6
33.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
85.1
0.79
0.7
80.2
31.2
Minor 5ss
32.6
-2
3.4
48
47.7
Minor BPS
71.2
0.66
1.7
81.43
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031117
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026388
26315438 - 26320233
4796