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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26343236_26343559_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26343236 - 26343559
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTACAA
5'SS Class:
major
3'SS Sequence:
CTTTCCTGGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTTTCCTGGACA
Flanking Amino Acid:
ACDTVENLPSGFDLETVKSN
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
60.7
39.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
71.2
0.48
1
68.2
37.5
Minor 5ss
29.9
-2.3
3.3
38.7
46.4
Minor BPS
71.8
0.68
1.5
79.36
36.8

Associated Gene:

Gene:
ASNS
Ensembl Gene ID:
ENSAPLG00000016311
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017026
26333969 - 26348681
14713