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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26343746_26345584_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26343746 - 26345584
Intron Length:
1839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCCTCTTTTATC
Flanking Amino Acid:
GFLGVCSEAKGLINLKHSES
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82.4
0.73
0.7
77.4
30.2
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
59.4
0.28
1.6
65.55
41

Associated Gene:

Gene:
ASNS
Ensembl Gene ID:
ENSAPLG00000016311
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017026
26333969 - 26348681
14713