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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26345823_26348413_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26345823 - 26348413
Intron Length:
2591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TACCTTTTCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTACCT
Flanking Amino Acid:
YNGEIYNFKQLQKQFGFEYQ
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
77.3
0.62
0.8
76.6
31.6
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
67.3
0.62
1.6
82.56
39.6

Associated Gene:

Gene:
ASNS
Ensembl Gene ID:
ENSAPLG00000016311
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017026
26333969 - 26348681
14713