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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26364607_26366411_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
26364607 - 26366411
Intron Length:
1805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTCCAAGCAACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATGACTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
77.5
32.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
57.8
0.18
1
50.7
36.8
Minor 5ss
29.2
-2.4
2.9
35.3
41.5
Minor BPS
56.3
0.28
1.6
70.65
41

Associated Gene:

Gene:
C1GALT1
Ensembl Gene ID:
ENSAPLG00000029207
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017463
26364409 - 26377305
12897