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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26366510_26369228_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
26366510 - 26369228
Intron Length:
2719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTGGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTAGGCTTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
69.9
43.4
Major BPS
100
1.24
0.5
100
0
Major PPT
73.9
0.54
1.1
72.2
42.7
Minor 5ss
44.5
-0.6
3.2
65.1
46.1
Minor BPS
61.1
0.34
1.9
71.78
40.8

Associated Gene:

Gene:
C1GALT1
Ensembl Gene ID:
ENSAPLG00000029207
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017463
26364409 - 26377305
12897