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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26369469_26371084_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
26369469 - 26371084
Intron Length:
1616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTTGT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
ATGCTTTCAAAT
Flanking Amino Acid:
NFNADSGQHKDENKNVADGL
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.2
71.4
41.2
Major BPS
77.3
0.68
1
81.5
27
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
62.5
0.42
2
76.4
38.9
Minor BPS
48.8
-0
1.6
64.98
39.4

Associated Gene:

Gene:
C1GALT1
Ensembl Gene ID:
ENSAPLG00000029207
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017463
26364409 - 26377305
12897
ENSAPLT00000001417
26363705 - 26373375
9671
ENSAPLT00000047870
26363705 - 26377305
13601
ENSAPLT00000018502
26368664 - 26373375
4712