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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26392992_26394854_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
26392992 - 26394854
Intron Length:
1863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTTTGTAAG
5'SS Class:
major
3'SS Sequence:
CAGATACACTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACCAGAT
U12 Branch Point Sequence:
TAGTCCACCACA
Flanking Amino Acid:
FMTLSGKRNYALPSAQDHTV
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64
0.33
1.2
64.7
40.7
Major BPS
52.7
0.07
1.1
48.6
36.6
Major PPT
43.9
-0.3
1.7
44.1
41.3
Minor 5ss
40
-1.1
2.5
48
40.9
Minor BPS
46.1
-0.3
2.2
62.02
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031039
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017895
26392797 - 26398712
5916