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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26411034_26412199_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26411034 - 26412199
Intron Length:
1166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTAGCA
5'SS Class:
major
3'SS Sequence:
TTTTCAAATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTCAAAT
Flanking Amino Acid:
PKGVGDPGPKILHWI*
Intron Amino Acid Position:
671

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
61.8
37
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73
0.52
0.9
67.8
37
Minor 5ss
29.7
-2.3
3.4
40.1
45.4
Minor BPS
66.1
0.58
1.6
85.04
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001910
26410479 - 26456144
45666