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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26418321_26420872_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26418321 - 26420872
Intron Length:
2552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATTATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTGGTTTTATTT
Flanking Amino Acid:
SSIQGPPGPKGDPGPKGPPG
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
83.2
28.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
72.7
0.51
1
72.1
38
Minor 5ss
34.9
-1.7
2.8
45.4
42.7
Minor BPS
53.1
0.18
1.7
70.24
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001910
26410479 - 26456144
45666
ENSAPLT00000001903
26411425 - 26456674
45250