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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26420942_26421628_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26420942 - 26421628
Intron Length:
687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCTTG
5'SS Class:
major
3'SS Sequence:
TGTTTTGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGTTTTGTAACA
Flanking Amino Acid:
KGVQGPAGPKGEPGERGPPG
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
72.5
39.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
77.3
0.61
1
73.3
40.9
Minor 5ss
49.2
-0
2.8
64.9
40.8
Minor BPS
60.6
0.33
2
75.16
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001910
26410479 - 26456144
45666
ENSAPLT00000001903
26411425 - 26456674
45250