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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26424220_26425337_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26424220 - 26425337
Intron Length:
1118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGCCTG
5'SS Class:
major
3'SS Sequence:
ATTCTTCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AATTATTTATTC
Flanking Amino Acid:
LPATGLRGLKGDIGPSGVPG
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
62.5
43.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.4
0.55
1
72.3
37.5
Minor 5ss
37.7
-1.4
3.2
47.8
42.2
Minor BPS
51.7
0.03
1.7
62.8
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001910
26410479 - 26456144
45666
ENSAPLT00000001903
26411425 - 26456674
45250