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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26429603_26430541_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26429603 - 26430541
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTTTA
5'SS Class:
major
3'SS Sequence:
TACTTATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
GGATACTTATTT
Flanking Amino Acid:
LPGEGIQGQKGEKGSEGVAG
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
75
38.1
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
78
0.63
0.8
70.3
40
Minor 5ss
47.9
-0.2
2.9
66.7
44.7
Minor BPS
52.1
0.14
1.8
67.81
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001910
26410479 - 26456144
45666
ENSAPLT00000001903
26411425 - 26456674
45250