Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26432660_26442955_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

26432660 - 26442955

Intron Length:

10296

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGATGT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTCCTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAT

U12 Branch Point Sequence:

ATTTCTTTAATA

Flanking Amino Acid:

PGLKGIQGSKGEQGPIGPYG

Intron Amino Acid Position:

347

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.6

0.98

0.8

81.6

33.2

Major BPS

0.75

78.6

Major PPT

84.3

0.77

0.7

77.9

Minor 5ss

39.7

-1.2

3.1

56.6

47.5

Minor BPS

83.5

1.05

0.9

85.51

26.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001777

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001910

26410479 - 26456144

45666

ENSAPLT00000001903

26411425 - 26456674

45250