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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26449492_26450020_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26449492 - 26450020
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TATATTTCAATT
Flanking Amino Acid:
KGEPGPKGNKGDAQKGDHGE
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
73.9
0.54
0.9
71
34.7
Minor 5ss
31
-2.2
3.2
40
45.7
Minor BPS
57.6
0.32
1.5
73.64
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001910
26410479 - 26456144
45666
ENSAPLT00000001903
26411425 - 26456674
45250