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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26451438_26452084_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26451438 - 26452084
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTTTTT
5'SS Class:
major
3'SS Sequence:
ATCAACCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ATGTTCTTAATG
Flanking Amino Acid:
SELEALLQKQCMQKNCVCEK
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
34.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
67.6
0.4
0.9
63.1
38.5
Minor 5ss
44.8
-0.6
3.2
66.9
44.3
Minor BPS
72
0.55
1.3
69.02
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001910
26410479 - 26456144
45666
ENSAPLT00000001903
26411425 - 26456674
45250