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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26455164_26456056_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
26455164 - 26456056
Intron Length:
893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTATAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCTTATAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.5
0.71
0.9
78.1
33.7
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
64
0.43
1.6
77.35
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001910
26410479 - 26456144
45666
ENSAPLT00000001903
26411425 - 26456674
45250