About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26471672_26472543_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26471672 - 26472543
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTCTCTCCAAAG
Flanking Amino Acid:
SESGSYDGVLYENNVAVRDR
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
73.5
0.53
1
74.9
27.7
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
46.9
-0.3
2
57.57
43.9

Associated Gene:

Gene:
MIOS
Ensembl Gene ID:
ENSAPLG00000002570
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022748
26467476 - 26477933
10458
ENSAPLT00000002597
26467476 - 26477320
9845