About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26483759_26484231_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26483759 - 26484231
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TGCCCTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
GGGAACTTAACA
Flanking Amino Acid:
VQFREDKSPFDLELYNEALK
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
79.9
0.67
0.8
76.7
32
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
58.2
0.25
1.6
63.27
42.1

Associated Gene:

Gene:
RPA3
Ensembl Gene ID:
ENSAPLG00000027160
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021543
26483561 - 26486000
2440