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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26484060_26484231_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26484060 - 26484231
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
ACATACTGAATA
Flanking Amino Acid:
VQFREDKSPFGEKQGLTQGL
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
73.9
0.59
1
81
30.2
Major PPT
81.8
0.72
0.9
75.5
38.4
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
53.1
0.09
1.6
60.8
38.9

Associated Gene:

Gene:
RPA3
Ensembl Gene ID:
ENSAPLG00000027160
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046968
26483911 - 26486000
2090