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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26484341_26485733_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26484341 - 26485733
Intron Length:
1393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTTAC
5'SS Class:
major
3'SS Sequence:
GTACGTTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ACTAATTTGATT
Flanking Amino Acid:
KQATVELSEPLDEEISGVIE
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.38
1.3
65.8
36.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
70.8
0.47
1
61.9
44.2
Minor 5ss
36.9
-1.5
2.9
48.1
41.4
Minor BPS
51.3
0.12
1.5
66.45
38.6

Associated Gene:

Gene:
RPA3
Ensembl Gene ID:
ENSAPLG00000027160
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046968
26483911 - 26486000
2090
ENSAPLT00000021543
26483561 - 26486000
2440