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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26491546_26545281_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26491546 - 26545281
Intron Length:
53736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTCAGTGATT
Flanking Amino Acid:
EREADGFVIVGETADDQNRE
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
32.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.5
0.53
0.9
68.7
37.2
Minor 5ss
33.9
-1.8
3.3
40.8
45.4
Minor BPS
50.7
0.1
2.3
78.39
38

Associated Gene:

Gene:
UMAD1
Ensembl Gene ID:
ENSAPLG00000002260
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002258
26491433 - 26563205
71773