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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26545368_26562767_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26545368 - 26562767
Intron Length:
17400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
AGTGTCTAAATT
Flanking Amino Acid:
TRPTYSQPSQTNTGHRSQLT
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.1
35.1
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
83.5
0.75
0.8
81.1
30.9
Minor 5ss
30.7
-2.2
3.7
46.1
49.1
Minor BPS
53.9
0.2
1.8
70.14
41.5

Associated Gene:

Gene:
UMAD1
Ensembl Gene ID:
ENSAPLG00000002260
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002258
26491433 - 26563205
71773