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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26622460_26630697_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26622460 - 26630697
Intron Length:
8238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
AACTTCTTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTCACCTGAACT
Flanking Amino Acid:
SWGSADQLKEQIAKLRQQLQ
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
78.9
0.65
0.9
69.8
40.6
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
72.6
0.79
1.5
85.98
39.7

Associated Gene:

Gene:
GLCCI1
Ensembl Gene ID:
ENSAPLG00000002840
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002880
26618154 - 26647000
28847