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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26630815_26634046_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26630815 - 26634046
Intron Length:
3232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTACCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
CATTTTCCAACT
Flanking Amino Acid:
GNHIAISQTQASISRSVPMP
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
77.3
0.68
1
81.5
27
Major PPT
76.5
0.6
0.8
73.6
31.1
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
49.1
0.01
1.9
69.52
41.5

Associated Gene:

Gene:
GLCCI1
Ensembl Gene ID:
ENSAPLG00000002840
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002880
26618154 - 26647000
28847