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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26634200_26640787_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26634200 - 26640787
Intron Length:
6588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
TTCTCTGTAACC
Flanking Amino Acid:
ENSGKEEVSKPLDIPDGRRA
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
84.1
30.2
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
92.6
0.96
0.6
88.3
21.3
Minor 5ss
47.4
-0.3
2.8
64.4
47
Minor BPS
64.8
0.45
2
77.59
39

Associated Gene:

Gene:
GLCCI1
Ensembl Gene ID:
ENSAPLG00000002840
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002880
26618154 - 26647000
28847