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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26640999_26646875_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26640999 - 26646875
Intron Length:
5877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTAAATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ACTGCTTTAAAT
Flanking Amino Acid:
TEDLLYDRDKDSGSSSPLPK
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
80.3
26.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
81.7
0.71
0.9
78.1
39.9
Minor 5ss
28.6
-2.5
3.4
37.8
47
Minor BPS
64
0.52
1.5
75.14
41.9

Associated Gene:

Gene:
GLCCI1
Ensembl Gene ID:
ENSAPLG00000002840
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002880
26618154 - 26647000
28847