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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26664558_26666330_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26664558 - 26666330
Intron Length:
1773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTTCTT
Flanking Amino Acid:
VNANKTPMKGEPTRNPKDLT
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
88
0.86
0.7
80.3
31.7
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
46
-0.2
3.6
83.03
38.5

Associated Gene:

Gene:
ICA1
Ensembl Gene ID:
ENSAPLG00000003010
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003087
26663611 - 26725475
61865
ENSAPLT00000026527
26663611 - 26727047
63437