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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26666430_26671585_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26666430 - 26671585
Intron Length:
5156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGAGCT
5'SS Class:
major
3'SS Sequence:
TATTGAATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TATTATTGAATT
Flanking Amino Acid:
NMNDLQSSLHGWAANSGSPP
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
69
35.8
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
70
0.45
1
60.4
44.7
Minor 5ss
28.1
-2.5
3.3
40.6
45.1
Minor BPS
61.9
0.45
1.6
79.19
36.7

Associated Gene:

Gene:
ICA1
Ensembl Gene ID:
ENSAPLG00000003010
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026527
26663611 - 26727047
63437
ENSAPLT00000003087
26663611 - 26725475
61865