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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26675780_26675884_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26675780 - 26675884
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGTGT
5'SS Class:
major
3'SS Sequence:
TTCCTGCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTTACTTACTA
Flanking Amino Acid:
QGSCNHKQNSGAIDDLLDLQ
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
68.9
38.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
74.7
0.56
0.8
73
31.9
Minor 5ss
32.4
-2
3.4
46.8
48.5
Minor BPS
60.8
0.33
1.8
73.11
38.8

Associated Gene:

Gene:
ICA1
Ensembl Gene ID:
ENSAPLG00000003010
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026527
26663611 - 26727047
63437