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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26675948_26678642_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26675948 - 26678642
Intron Length:
2695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTAT
5'SS Class:
major
3'SS Sequence:
ATCTTGATTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TGGATCTTGATT
Flanking Amino Acid:
ESHTKESDYSAADGKDALSK
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.6
31.1
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
76.7
0.6
0.9
69.5
40
Minor 5ss
48
-0.2
2.5
66.9
44.3
Minor BPS
61.3
0.44
1.3
71.74
39.6

Associated Gene:

Gene:
ICA1
Ensembl Gene ID:
ENSAPLG00000003010
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026527
26663611 - 26727047
63437