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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26717517_26719163_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26717517 - 26719163
Intron Length:
1647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TATTTTTCATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTATTTTTCATT
Flanking Amino Acid:
AIGLYQKRICFLSQEENELG
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.5
38.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
78.3
0.64
0.9
79.3
33.7
Minor 5ss
41.9
-0.9
2.8
57.5
41
Minor BPS
61.3
0.44
1.7
79.64
37.1

Associated Gene:

Gene:
ICA1
Ensembl Gene ID:
ENSAPLG00000003010
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026527
26663611 - 26727047
63437
ENSAPLT00000003087
26663611 - 26725475
61865