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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26719237_26721178_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26719237 - 26721178
Intron Length:
1942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTAAT
5'SS Class:
major
3'SS Sequence:
GTTTCAATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTGTTTCAATT
Flanking Amino Acid:
SDADLDAKLELFHSIQRTCM
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
80.8
32.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
79
0.65
0.9
75.1
38.7
Minor 5ss
39.8
-1.1
2.5
51.4
45.2
Minor BPS
60.8
0.42
1.6
79.05
38

Associated Gene:

Gene:
ICA1
Ensembl Gene ID:
ENSAPLG00000003010
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026527
26663611 - 26727047
63437
ENSAPLT00000003087
26663611 - 26725475
61865