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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_27106859_27107594_F

Intron Information:

Intron Rank:
133598
Intron Class:
major
Intron Phase:
Intron Coordinates:
27106859 - 27107594
Intron Length:
736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTCAA
U12 Branch Point Sequence:
GTCCAGTCAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
55.5
0.14
1.2
59
37.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
39.3
-0.9
2.2
42.82
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021860
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047998
27100825 - 27109127
8303
ENSAPLT00000033577
27100825 - 27109262
8438
ENSAPLT00000021698
27103859 - 27109127
5269