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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2719612_2720875_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2719612 - 2720875
Intron Length:
1264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGAGA
5'SS Class:
major
3'SS Sequence:
CATTTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATCATTT
Flanking Amino Acid:
RIQQYQTIIKELIRNKARNS
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
68.1
38.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
85.8
0.81
0.8
80.2
31.5
Minor 5ss
25.5
-2.8
3
30.9
42.7
Minor BPS
47.6
-0.1
2.1
73.31
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019155
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042171
2719414 - 2744161
24748