About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_27234253_27234361_F

Intron Information:

Intron Rank:
135596
Intron Class:
major
Intron Phase:
Intron Coordinates:
27234253 - 27234361
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTCAGGTTA
5'SS Class:
major
3'SS Sequence:
GAAATTTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTCTGTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.3
66.6
41.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
69.7
0.44
1
66.4
44.5
Minor 5ss
35.3
-1.7
3.3
39
46.2
Minor BPS
48.4
-0
2.2
75.47
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022956
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029088
27234091 - 27238039
3949