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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_27235217_27235767_F

Intron Information:

Intron Rank:
135598
Intron Class:
major
Intron Phase:
Intron Coordinates:
27235217 - 27235767
Intron Length:
551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
ACTTGCTCATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.1
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
85.5
0.8
0.7
77.5
31.3
Minor 5ss
28.4
-2.5
3.5
37
47.6
Minor BPS
45.2
-0.3
2.1
56.52
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022956
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029088
27234091 - 27238039
3949