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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_27235915_27236172_F

Intron Information:

Intron Rank:
135599
Intron Class:
major
Intron Phase:
Intron Coordinates:
27235915 - 27236172
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TATTTCTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
80.6
0.69
0.7
73.6
31.4
Minor 5ss
28.4
-2.5
3.5
37
47.6
Minor BPS
79.7
1.01
1.2
90.42
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022956
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029088
27234091 - 27238039
3949