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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2723925_2725574_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2723925 - 2725574
Intron Length:
1650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TCTGATGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATGT
Flanking Amino Acid:
IQQRISQPVWIPPDFEEELA
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
71.6
40.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
76.6
0.6
1
72.8
41.9
Minor 5ss
35.2
-1.7
2.8
39
40.2
Minor BPS
54.7
0.23
2
80.23
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019155
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042171
2719414 - 2744161
24748