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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_27259567_27264164_F

Intron Information:

Intron Rank:
134191
Intron Class:
major
Intron Phase:
Intron Coordinates:
27259567 - 27264164
Intron Length:
4598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTGAA
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
TTTCTCTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
73.7
32.5
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
93.8
0.98
0.5
92.8
16.7
Minor 5ss
32.1
-2
3.1
39.9
46.1
Minor BPS
62.5
0.47
1.7
82.38
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022110
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025352
27257056 - 27264353
7298