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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2735116_2738876_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2735116 - 2738876
Intron Length:
3761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
TTTCCCTCATCA
Flanking Amino Acid:
ETKVPKKTIIIEETITTVVK
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.9
31.3
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
79.3
0.66
0.8
78.7
28.5
Minor 5ss
37.8
-1.4
3.3
55.2
42.1
Minor BPS
62
0.37
1.8
77.6
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019155
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042171
2719414 - 2744161
24748