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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2740047_2740142_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2740047 - 2740142
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTTTGAGGA
5'SS Class:
weak_major
3'SS Sequence:
CTTTCCACGTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
GGCCCCTCAAAC
Flanking Amino Acid:
VSKPRKRFFSNDTSAASSAP
Intron Amino Acid Position:
736

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.2
0.22
1.2
53.6
37.6
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
49.8
-0
1.7
63.1
38.2
Minor 5ss
34
-1.8
3.2
39.5
40.3
Minor BPS
49.1
-0
1.7
55.64
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019155
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042171
2719414 - 2744161
24748