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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_27600684_27601613_R

Intron Information:

Intron Rank:
155077
Intron Class:
major
Intron Phase:
Intron Coordinates:
27600684 - 27601613
Intron Length:
930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
GTTATACTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTTGTTATACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
73.2
0.52
0.9
65.7
40
Minor 5ss
32.4
-2
3
40.7
45.5
Minor BPS
49.2
0.02
2.4
79.44
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030962
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029353
27600430 - 27602413
1984