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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_27609378_27609834_R

Intron Information:

Intron Rank:
154357
Intron Class:
major
Intron Phase:
Intron Coordinates:
27609378 - 27609834
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGATTATC
5'SS Class:
major
3'SS Sequence:
TTTATGCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.61
1
75.9
33
Major BPS
100
1.24
0.5
100
0
Major PPT
83.3
0.75
0.9
76.6
37.5
Minor 5ss
35.1
-1.7
2.8
42.7
38.5
Minor BPS
60.4
0.18
2
72.78
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030552
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019538
27609087 - 27612010
2924