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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_27609930_27611361_R

Intron Information:

Intron Rank:
154358
Intron Class:
major
Intron Phase:
Intron Coordinates:
27609930 - 27611361
Intron Length:
1432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTGTT
5'SS Class:
major
3'SS Sequence:
TTTCTTTATATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTTTCTTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
77.9
36.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
83.9
0.76
0.8
80.9
30.1
Minor 5ss
51
0.03
2.9
75.5
40.6
Minor BPS
63.9
0.52
1.7
80.79
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030552
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019538
27609087 - 27612010
2924