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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_27666801_27670466_F

Intron Information:

Intron Rank:
138686
Intron Class:
major
Intron Phase:
Intron Coordinates:
27666801 - 27670466
Intron Length:
3666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ACCTGATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TTTACCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
73.1
0.52
0.9
65.6
39.5
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
61
0.42
1.8
81.88
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024669
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037204
27666437 - 27670761
4325