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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_27732372_27732486_F

Intron Information:

Intron Rank:
146999
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
27732372 - 27732486
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTACAGAAG
5'SS Class:
weak_major
3'SS Sequence:
TAAATATTCTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59
0.21
1.2
56
42.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
58.7
0.2
1.1
61.2
43.4
Minor 5ss
32.3
-2
3.5
42.7
44.9
Minor BPS
59
0.36
1.8
79.65
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029174
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022478
27732259 - 27735147
2889