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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_27838038_27840056_F

Intron Information:

Intron Rank:
135243
Intron Class:
major
Intron Phase:
Intron Coordinates:
27838038 - 27840056
Intron Length:
2019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTGTTACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.1
0.72
0.7
76.6
25.4
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
53.1
0.08
2.3
73.1
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022755
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020849
27837723 - 27841141
3419