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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_27838038_27841269_F

Intron Information:

Intron Rank:
135244
Intron Class:
major
Intron Phase:
Intron Coordinates:
27838038 - 27841269
Intron Length:
3232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATGGAATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTAATTATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
78.6
0.71
1
78.6
31
Major PPT
67.6
0.4
1.1
59.1
45.5
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
50.2
0.09
1.7
71.62
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022755
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035998
27837723 - 27841382
3660