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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_27913917_27914253_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27913917 - 27914253
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTCAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGTTTCTCAATA
Flanking Amino Acid:
MRLAIFNPDVCWDKKNNPEP
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.5
31.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
74.2
0.55
0.9
70.8
34.8
Minor 5ss
45.5
-0.5
2.5
56.3
43.3
Minor BPS
68.2
0.57
1.5
76.08
35.1

Associated Gene:

Gene:
NDUFA4
Ensembl Gene ID:
ENSAPLG00000016250
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016951
27911770 - 27915011
3242